Shows the sequence of Riboswitch (Rfam ID for fasta file download). We keep the U in the partial sequence because it is consistent with the sequence information in the fasta file. ( We provide the script could change T into U on the page).
Search by sequence (Continuously updated)
About sequence in Riboswitch database
The table below presents the complete collection of currently available sequences from RNAcentre. Click 'download' to obtain the desired target sequence.| Name | Rfam ID | Download linker |
|---|---|---|
| FMN | RF00050 | Download |
| TPP | RF00059 | Download |
| Mn2+ | RF00080 | Download |
| SAM-I | RF00162 | Download |
| Guanine | RF00167 | Download |
| Lysine | RF00168 | Download |
| AdoCbl | RF00174 | Download |
| T-box | RF00230 | Download |
| GlcN6P | RF00234 | Download |
| c-di-AMP | RF00379 | Download |
| Mg2＋-I | RF00380 | Download |
| Guanidine-I | RF00442 | Download |
| Glycine | RF00504 | Download |
| SAM-II | RF00521 | Download |
| PreQ1-I | RF00522 | Download |
| SAM-IV | RF00634 | Download |
| c-di-GMP | RF01051 | Download |
| Name | Rfam ID | Download linker |
|---|---|---|
| PreQ1-II | RF01054 | Download |
| MoCo | RF01055 | Download |
| Mg2＋-II | RF01056 | Download |
| SAH | RF01057 | Download |
| Guanidine-II | RF01068 | Download |
| AdoCbl | RF01482 | Download |
| AqCbl | RF01689 | Download |
| Glutamine-II | RF01704 | Download |
| SAM-I/IV | RF01725 | Download |
| SAM-SAH | RF01727 | Download |
| Fluoride | RF01734 | Download |
| Glutamine-I | RF01739 | Download |
| ZTP | RF01750 | Download |
| Guanidine-III | RF01763 | Download |
| Azaaromatic | RF01764 | Download |
| SAM-III | RF01767 | Download |
| c-di-GMP-II | RF01786 | Download |
| Name | Rfam ID | Download linker |
|---|---|---|
| SAM-V | RF01826 | Download |
| THF-I | RF01831 | Download |
| preQ1-III | RF02680 | Download |
| NiCo | RF02683 | Download |
| SAM-VI | RF02885 | Download |
| PRA | RF02974 | Download |
| THF-II | RF02977 | Download |
| NAD+-I | RF03013 | Download |
| Li+-II | RF03038 | Download |
| Xanthine-I | RF03054 | Download |
| Li+-I | RF03057 | Download |
| Na+-I | RF03071 | Download |
| 2-dG-II | RF03165 | Download |
| c-di-GMP | RF03167 | Download |
| c-di-GMP | RF03168 | Download |
| c-di-GMP | RF03169 | Download |
| c-di-GMP | RF03170 | Download |
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